| TF name | Position | PWM scan score |
| RcsB | 337-350 | 13.612 |
| Mlc | 342-364 | 10.512 |
| IHF | 112-124 | 10.209 |
| OxyR | 326-370 | 9.826 |
| GlpR | 66-85 | 9.430 |
| FNR | 61-82 | 8.748 |
| FadR | 286-302 | 8.496 |
| GcvA | 333-361 | 8.304 |
| Nac | 380-394 | 8.299 |
| NorR | 121-137 | 8.219 |
| TorR | 59-68 | 7.821 |
| ArgP | 69-81 | 7.432 |
| Fur | 337-351 | 7.361 |
| UlaR | 379-398 | 7.282 |
| H-NS | 339-353 | 7.278 |
| ModE | 67-93 | 7.236 |
| UxuR | 381-398 | 7.197 |
| MetJ | 208-215 | 7.171 |
| CueR | 134-152 | 7.116 |
| DnaA | 76-84 | 7.095 |
| NarL | 239-245 | 7.041 |
| MelR | 319-336 | 6.922 |
| MalT | 306-315 | 6.751 |
| SoxS | 20-37 | 6.235 |
| DeoR | 60-75 | 6.011 |
| RhaS | 17-33 | 5.734 |
| CRP | 48-69 | 5.636 |
| NarP | 15-21 | 5.627 |
| LexA | 121-140 | 5.557 |
| AraC | 208-225 | 5.541 |
| MetR | 101-124 | 5.376 |
| CpxR | 343-357 | 5.345 |
| Fis | 104-124 | 5.156 |
| Lrp | 286-297 | 5.123 |
| XylR | 233-250 | 5.090 |