| TF name | Position | PWM scan score |
| ArcA | 309-369 | 19.496 |
| GcvA | 131-159 | 15.713 |
| CytR | 323-362 | 15.102 |
| Fur | 326-340 | 13.365 |
| GadE | 313-332 | 12.684 |
| AgaR | 301-324 | 12.050 |
| Rob | 312-332 | 11.793 |
| TorR | 313-322 | 11.301 |
| ModE | 303-329 | 10.103 |
| CysB | 276-317 | 9.875 |
| H-NS | 135-149 | 9.363 |
| OmpR | 134-153 | 9.074 |
| ArgR | 312-327 | 9.063 |
| Nac | 358-372 | 8.964 |
| MetR | 317-340 | 8.783 |
| CRP | 335-356 | 8.760 |
| NarL | 113-119 | 8.755 |
| PhoP | 160-176 | 8.676 |
| FNR | 326-347 | 8.659 |
| UlaR | 350-369 | 7.960 |
| CpxR | 323-337 | 7.917 |
| PurR | 188-203 | 7.755 |
| MetJ | 344-351 | 7.714 |
| MarA | 218-238 | 7.711 |
| MalT | 2-11 | 7.671 |
| IHF | 382-394 | 7.636 |
| NagC | 317-339 | 7.636 |
| ArgP | 170-182 | 7.510 |
| XylR | 131-148 | 7.465 |
| NtrC | 129-145 | 7.273 |
| NarP | 266-272 | 7.162 |
| PhoB | 125-144 | 6.742 |
| AraC | 61-78 | 6.542 |
| LacI | 193-213 | 6.417 |
| DnaA | 140-148 | 6.340 |
| PspF | 186-202 | 6.239 |
| Fis | 333-353 | 5.582 |
| Mlc | 337-359 | 5.513 |
| RcsB | 162-175 | 5.378 |
| NorR | 308-324 | 5.359 |
| Lrp | 303-314 | 5.239 |
| GntR | 236-255 | 5.212 |