| TF name | Position | PWM scan score |
| ArcA | 327-387 | 22.504 |
| ArgR | 358-373 | 15.093 |
| SoxS | 207-224 | 14.218 |
| AgaR | 342-365 | 13.646 |
| CytR | 319-358 | 13.411 |
| Fur | 343-357 | 13.352 |
| CysB | 322-363 | 11.471 |
| OmpR | 336-355 | 10.491 |
| UlaR | 340-359 | 10.212 |
| ModE | 349-375 | 10.116 |
| FNR | 366-387 | 9.633 |
| Fis | 355-375 | 9.618 |
| Nac | 51-65 | 9.465 |
| OxyR | 314-358 | 9.456 |
| DeoR | 269-284 | 9.304 |
| NagC | 275-297 | 9.273 |
| Rob | 358-378 | 8.862 |
| CRP | 325-346 | 8.687 |
| RcsB | 50-63 | 8.542 |
| Ada | 277-304 | 8.524 |
| TorR | 309-318 | 8.515 |
| CpxR | 87-101 | 8.203 |
| H-NS | 71-85 | 8.159 |
| MetJ | 384-391 | 7.714 |
| ArgP | 54-66 | 7.588 |
| IHF | 317-329 | 7.418 |
| GadE | 336-355 | 7.350 |
| PhoP | 333-349 | 7.245 |
| MalT | 142-151 | 6.983 |
| AraC | 195-212 | 6.924 |
| TyrR | 356-377 | 6.904 |
| FadR | 123-139 | 6.777 |
| NorR | 348-364 | 6.732 |
| MarA | 350-370 | 6.351 |
| Lrp | 224-235 | 6.176 |
| MelR | 13-30 | 6.009 |
| Mlc | 273-295 | 5.949 |
| IdnR | 56-71 | 5.647 |
| NarL | 194-200 | 5.541 |
| NarP | 99-105 | 5.507 |
| PhoB | 279-298 | 5.377 |
| XylR | 287-304 | 5.348 |
| GntR | 347-366 | 5.112 |