| TF name | Position | PWM scan score |
| PurR | 381-396 | 14.224 |
| Rob | 130-150 | 9.797 |
| MarA | 13-33 | 9.158 |
| IHF | 24-36 | 8.850 |
| PhoB | 20-39 | 8.772 |
| ArgP | 51-63 | 8.726 |
| GlpR | 129-148 | 8.449 |
| H-NS | 18-32 | 7.653 |
| GalR | 65-80 | 7.032 |
| GalS | 65-80 | 7.032 |
| OmpR | 20-39 | 7.025 |
| MelR | 191-208 | 6.995 |
| SoxS | 15-32 | 6.764 |
| DnaA | 390-398 | 6.741 |
| Fur | 127-141 | 6.646 |
| GcvA | 25-53 | 6.416 |
| Nac | 219-233 | 6.394 |
| DeoR | 246-261 | 6.054 |
| MetJ | 212-219 | 6.040 |
| LacI | 243-263 | 6.033 |
| NarL | 274-280 | 5.986 |
| CRP | 2-23 | 5.937 |
| AraC | 65-82 | 5.504 |
| GntR | 68-87 | 5.481 |
| GadE | 8-27 | 5.430 |
| FadR | 359-375 | 5.265 |
| Lrp | 166-177 | 5.087 |
| TorR | 209-218 | 5.031 |
| TyrR | 55-76 | 5.019 |