| TF name | Position | PWM scan score |
| MarA | 375-395 | 9.158 |
| IHF | 386-398 | 8.850 |
| FNR | 162-183 | 8.335 |
| MetJ | 75-82 | 7.980 |
| XylR | 231-248 | 7.934 |
| FruR | 6-23 | 7.763 |
| H-NS | 380-394 | 7.653 |
| DnaA | 39-47 | 7.376 |
| ArgP | 375-387 | 7.055 |
| AraC | 41-58 | 6.945 |
| SoxS | 377-394 | 6.764 |
| Fis | 250-270 | 6.549 |
| GadE | 237-256 | 6.517 |
| NagC | 180-202 | 6.435 |
| TorR | 40-49 | 6.143 |
| FadR | 334-350 | 5.970 |
| CRP | 364-385 | 5.937 |
| Lrp | 347-358 | 5.924 |
| MelR | 20-37 | 5.775 |
| RcsB | 34-47 | 5.699 |
| UxuR | 147-164 | 5.674 |
| DeoR | 4-19 | 5.496 |
| CueR | 178-196 | 5.262 |
| NarP | 140-146 | 5.154 |