| TF name | Position | PWM scan score |
| FadR | 36-52 | 16.382 |
| MelR | 174-191 | 10.895 |
| RhaS | 360-376 | 9.677 |
| GntR | 22-41 | 9.590 |
| XylR | 76-93 | 9.437 |
| AraC | 292-309 | 9.353 |
| NarP | 31-37 | 8.911 |
| Rob | 374-394 | 8.617 |
| H-NS | 286-300 | 8.570 |
| LexA | 107-126 | 7.608 |
| IHF | 371-383 | 7.386 |
| DnaA | 381-389 | 7.330 |
| TorR | 196-205 | 7.222 |
| Fis | 176-196 | 6.960 |
| CRP | 290-311 | 6.777 |
| LacI | 223-243 | 6.776 |
| DeoR | 249-264 | 6.776 |
| Lrp | 317-328 | 6.605 |
| NarL | 100-106 | 6.294 |
| MetR | 218-241 | 6.291 |
| GadE | 285-304 | 6.151 |
| ArgR | 284-299 | 5.799 |
| IdnR | 186-201 | 5.798 |
| MarA | 283-303 | 5.523 |
| MetJ | 155-162 | 5.316 |
| RcsB | 98-111 | 5.292 |