| TF name | Position | PWM scan score |
| ArcA | 67-127 | 15.172 |
| OmpR | 100-119 | 12.998 |
| ModE | 103-129 | 12.304 |
| RcsB | 88-101 | 11.456 |
| PspF | 35-51 | 11.417 |
| XylR | 291-308 | 11.377 |
| Rob | 293-313 | 10.774 |
| SoxS | 204-221 | 10.286 |
| NtrC | 31-47 | 9.847 |
| TyrR | 60-81 | 9.783 |
| GcvA | 105-133 | 9.622 |
| CytR | 79-118 | 9.478 |
| AraC | 58-75 | 9.428 |
| NarP | 247-253 | 8.982 |
| IHF | 341-353 | 8.292 |
| Nac | 56-70 | 8.292 |
| PurR | 341-356 | 7.628 |
| Lrp | 63-74 | 7.615 |
| FadR | 10-26 | 7.269 |
| GadE | 332-351 | 7.168 |
| NagC | 138-160 | 7.155 |
| H-NS | 130-144 | 7.142 |
| Mlc | 136-158 | 6.872 |
| LacI | 329-349 | 6.732 |
| FNR | 172-193 | 6.655 |
| Fis | 188-208 | 6.405 |
| NarL | 63-69 | 5.902 |
| AgaR | 113-136 | 5.839 |
| PhoP | 88-104 | 5.820 |
| UlaR | 337-356 | 5.810 |
| NorR | 71-87 | 5.801 |
| ArgR | 60-75 | 5.739 |
| MarA | 264-284 | 5.627 |
| GlpR | 112-131 | 5.550 |
| TorR | 19-28 | 5.493 |
| MetJ | 371-378 | 5.373 |
| Fur | 109-123 | 5.181 |
| CRP | 154-175 | 5.131 |
| Ada | 166-193 | 5.117 |