| TF name | Position | PWM scan score |
| ArcA | 317-377 | 12.914 |
| OxyR | 329-373 | 12.367 |
| GadE | 357-376 | 11.745 |
| MetJ | 29-36 | 10.971 |
| NagC | 337-359 | 10.642 |
| ArgR | 350-365 | 10.209 |
| NarP | 96-102 | 9.705 |
| TrpR | 345-362 | 9.430 |
| H-NS | 352-366 | 9.249 |
| Fis | 340-360 | 9.211 |
| PspF | 52-68 | 8.621 |
| GntR | 138-157 | 8.607 |
| PhoP | 348-364 | 8.488 |
| CysB | 356-397 | 8.241 |
| MalT | 381-390 | 8.067 |
| Lrp | 19-30 | 7.996 |
| TorR | 389-398 | 7.994 |
| MarA | 126-146 | 7.914 |
| PhoB | 97-116 | 7.723 |
| IHF | 350-362 | 7.558 |
| GalR | 335-350 | 7.029 |
| GalS | 335-350 | 7.029 |
| UxuR | 53-70 | 6.849 |
| CueR | 179-197 | 6.453 |
| LacI | 363-383 | 6.417 |
| NarL | 332-338 | 6.131 |
| ModE | 328-354 | 6.091 |
| IdnR | 376-391 | 5.964 |
| Mlc | 336-358 | 5.679 |
| ArgP | 1-13 | 5.674 |
| Nac | 106-120 | 5.609 |
| CRP | 355-376 | 5.420 |