| TF name | Position | PWM scan score |
| ArcA | 166-226 | 12.914 |
| XylR | 237-254 | 12.376 |
| OxyR | 178-222 | 12.367 |
| GadE | 206-225 | 11.745 |
| NagC | 186-208 | 10.642 |
| ArgR | 199-214 | 10.209 |
| IHF | 298-310 | 9.905 |
| TrpR | 194-211 | 9.430 |
| DcuR | 227-281 | 9.327 |
| MetR | 243-266 | 9.315 |
| H-NS | 201-215 | 9.249 |
| Fis | 189-209 | 9.211 |
| TyrR | 236-257 | 9.082 |
| CytR | 305-344 | 8.911 |
| Nac | 271-285 | 8.617 |
| PhoP | 197-213 | 8.488 |
| Fur | 377-391 | 8.310 |
| CysB | 205-246 | 8.241 |
| AgaR | 266-289 | 8.173 |
| MalT | 230-239 | 8.067 |
| TorR | 238-247 | 7.994 |
| PhoB | 307-326 | 7.489 |
| NarP | 233-239 | 7.352 |
| FNR | 239-260 | 7.120 |
| GalR | 184-199 | 7.029 |
| GalS | 184-199 | 7.029 |
| DeoR | 291-306 | 6.593 |
| CueR | 28-46 | 6.453 |
| PspF | 226-242 | 6.421 |
| LacI | 212-232 | 6.417 |
| Ada | 266-293 | 6.399 |
| OmpR | 241-260 | 6.229 |
| NorR | 234-250 | 6.211 |
| RcsB | 239-252 | 6.202 |
| NarL | 181-187 | 6.131 |
| ModE | 177-203 | 6.091 |
| UlaR | 275-294 | 5.990 |
| DnaA | 334-342 | 5.970 |
| IdnR | 225-240 | 5.964 |
| Lrp | 181-192 | 5.918 |
| Mlc | 185-207 | 5.679 |
| MetJ | 95-102 | 5.497 |
| CRP | 204-225 | 5.420 |
| ArgP | 220-232 | 5.304 |
| CpxR | 363-377 | 5.139 |
| MelR | 317-334 | 5.014 |