| TF name | Position | PWM scan score |
| OmpR | 356-375 | 16.609 |
| OxyR | 207-251 | 15.108 |
| Fis | 247-267 | 12.510 |
| ArcA | 320-380 | 12.383 |
| ArgR | 170-185 | 12.046 |
| GlpR | 359-378 | 11.837 |
| H-NS | 172-186 | 11.498 |
| Ada | 203-230 | 11.305 |
| IHF | 351-363 | 11.301 |
| Mlc | 97-119 | 11.218 |
| PhoB | 156-175 | 11.214 |
| PspF | 287-303 | 10.305 |
| Fur | 219-233 | 10.006 |
| NorR | 241-257 | 9.990 |
| IdnR | 313-328 | 9.848 |
| UlaR | 307-326 | 9.833 |
| AgaR | 330-353 | 9.596 |
| GadE | 347-366 | 9.583 |
| FNR | 226-247 | 9.501 |
| CysB | 310-351 | 9.327 |
| Nac | 246-260 | 9.111 |
| SoxS | 145-162 | 9.058 |
| ModE | 369-395 | 8.945 |
| CytR | 224-263 | 8.692 |
| CRP | 318-339 | 8.562 |
| FadR | 373-389 | 8.510 |
| TorR | 224-233 | 8.245 |
| DeoR | 303-318 | 8.185 |
| TyrR | 132-153 | 7.955 |
| MelR | 175-192 | 7.882 |
| FhlA | 51-90 | 7.748 |
| UxuR | 247-264 | 7.519 |
| Lrp | 222-233 | 7.505 |
| PhoP | 179-195 | 7.456 |
| MarA | 162-182 | 7.431 |
| MetR | 289-312 | 7.408 |
| NagC | 228-250 | 6.915 |
| AraC | 88-105 | 6.631 |
| NarP | 378-384 | 6.488 |
| RcsB | 372-385 | 6.461 |
| Rob | 190-210 | 6.434 |
| NarL | 143-149 | 6.388 |
| GcvA | 352-380 | 6.359 |
| XylR | 277-294 | 6.111 |
| RhaS | 142-158 | 6.099 |
| NtrC | 80-96 | 5.859 |
| ArgP | 198-210 | 5.783 |
| GntR | 318-337 | 5.758 |
| DnaA | 256-264 | 5.650 |
| LacI | 226-246 | 5.256 |