| TF name | Position | PWM scan score |
| ArgR | 238-253 | 12.393 |
| FNR | 378-399 | 11.802 |
| GadE | 140-159 | 11.591 |
| FruR | 17-34 | 10.915 |
| PhoP | 225-241 | 10.532 |
| GcvA | 303-331 | 10.490 |
| H-NS | 279-293 | 9.805 |
| ArcA | 244-304 | 9.142 |
| IHF | 334-346 | 9.124 |
| TyrR | 262-283 | 8.871 |
| PurR | 63-78 | 8.736 |
| GalR | 63-78 | 8.728 |
| GalS | 63-78 | 8.728 |
| CysB | 113-154 | 8.592 |
| XylR | 85-102 | 8.404 |
| MarA | 264-284 | 8.009 |
| OmpR | 268-287 | 7.944 |
| Fis | 232-252 | 7.637 |
| Nac | 88-102 | 7.500 |
| NarL | 329-335 | 7.310 |
| MelR | 239-256 | 7.065 |
| Fur | 100-114 | 7.005 |
| PhoB | 130-149 | 6.927 |
| DnaA | 344-352 | 6.434 |
| AraC | 307-324 | 6.180 |
| RcsB | 301-314 | 6.144 |
| CRP | 375-396 | 5.971 |
| MetR | 98-121 | 5.949 |
| MetJ | 217-224 | 5.910 |
| ModE | 231-257 | 5.902 |
| Lrp | 127-138 | 5.571 |
| IdnR | 308-323 | 5.328 |
| ArgP | 95-107 | 5.210 |
| Rob | 242-262 | 5.039 |