| TF name | Position | PWM scan score |
| ArcA | 50-110 | 17.176 |
| H-NS | 48-62 | 14.926 |
| NagC | 35-57 | 12.417 |
| Mlc | 25-47 | 12.255 |
| CytR | 46-85 | 11.881 |
| CRP | 265-286 | 11.788 |
| IHF | 72-84 | 10.630 |
| SoxS | 78-95 | 10.433 |
| CysB | 24-65 | 10.290 |
| ArgR | 217-232 | 10.057 |
| GlpR | 349-368 | 9.963 |
| OmpR | 35-54 | 9.399 |
| Rob | 376-396 | 9.135 |
| PhoP | 70-86 | 9.013 |
| NarL | 6-12 | 8.755 |
| Fis | 73-93 | 8.536 |
| DeoR | 353-368 | 8.490 |
| Lrp | 35-46 | 8.426 |
| GcvA | 77-105 | 8.375 |
| ArgP | 377-389 | 8.362 |
| RcsB | 24-37 | 8.188 |
| TyrR | 112-133 | 8.007 |
| MetJ | 215-222 | 7.907 |
| AraC | 147-164 | 7.717 |
| MetR | 104-127 | 7.665 |
| FNR | 35-56 | 7.535 |
| TorR | 123-132 | 7.314 |
| Nac | 173-187 | 6.924 |
| AgaR | 305-328 | 6.558 |
| CpxR | 126-140 | 6.251 |
| NorR | 43-59 | 6.094 |
| GalR | 235-250 | 5.904 |
| GalS | 235-250 | 5.904 |
| FhlA | 171-210 | 5.877 |
| XylR | 167-184 | 5.770 |
| GadE | 45-64 | 5.417 |
| NarP | 225-231 | 5.306 |
| PhoB | 379-398 | 5.211 |
| MarA | 76-96 | 5.140 |
| FadR | 363-379 | 5.015 |