| TF name | Position | PWM scan score |
| ArcA | 293-353 | 17.176 |
| H-NS | 291-305 | 14.926 |
| NagC | 278-300 | 12.417 |
| Mlc | 268-290 | 12.255 |
| CytR | 289-328 | 11.881 |
| Nac | 109-123 | 11.246 |
| IHF | 315-327 | 10.630 |
| SoxS | 321-338 | 10.433 |
| CysB | 267-308 | 10.290 |
| OmpR | 278-297 | 9.399 |
| GadE | 50-69 | 9.023 |
| PhoP | 313-329 | 9.013 |
| AraC | 144-161 | 8.828 |
| NarL | 249-255 | 8.755 |
| Fis | 316-336 | 8.536 |
| CRP | 56-77 | 8.508 |
| Lrp | 278-289 | 8.426 |
| ArgR | 297-312 | 8.422 |
| GcvA | 320-348 | 8.375 |
| RcsB | 267-280 | 8.188 |
| TyrR | 355-376 | 8.007 |
| NarP | 194-200 | 7.885 |
| MetR | 347-370 | 7.665 |
| FNR | 278-299 | 7.535 |
| ArgP | 314-326 | 7.447 |
| TorR | 366-375 | 7.314 |
| DeoR | 367-382 | 7.274 |
| UlaR | 164-183 | 6.463 |
| CpxR | 369-383 | 6.251 |
| NorR | 286-302 | 6.094 |
| GlpR | 283-302 | 5.926 |
| GntR | 28-47 | 5.752 |
| RhaS | 78-94 | 5.596 |
| LacI | 220-240 | 5.569 |
| MarA | 41-61 | 5.280 |
| AgaR | 267-290 | 5.175 |