| TF name | Position | PWM scan score |
| Nac | 375-389 | 10.192 |
| Fis | 43-63 | 9.946 |
| ModE | 38-64 | 9.876 |
| LacI | 248-268 | 9.511 |
| AraC | 371-388 | 9.334 |
| ArgR | 92-107 | 8.782 |
| Lrp | 382-393 | 8.737 |
| Rob | 260-280 | 8.099 |
| CpxR | 55-69 | 7.991 |
| AgaR | 30-53 | 7.963 |
| MalT | 310-319 | 7.670 |
| ArcA | 32-92 | 7.431 |
| DnaA | 53-61 | 7.282 |
| TorR | 370-379 | 7.088 |
| NarL | 384-390 | 7.080 |
| RhaS | 215-231 | 7.015 |
| FadR | 82-98 | 6.965 |
| MetJ | 319-326 | 6.963 |
| Ada | 5-32 | 6.859 |
| H-NS | 48-62 | 6.596 |
| UlaR | 374-393 | 6.532 |
| CRP | 118-139 | 6.527 |
| NarP | 289-295 | 6.029 |
| PurR | 34-49 | 6.018 |
| SoxS | 209-226 | 5.925 |
| GntR | 5-24 | 5.724 |
| IHF | 379-391 | 5.588 |
| IdnR | 15-30 | 5.560 |
| CueR | 213-231 | 5.271 |
| DeoR | 170-185 | 5.238 |
| MarA | 183-203 | 5.167 |
| GalS | 130-145 | 5.091 |
| GalR | 130-145 | 5.091 |