| TF name | Position | PWM scan score |
| PhoB | 199-218 | 15.347 |
| ArcA | 246-306 | 12.009 |
| GadE | 196-215 | 11.171 |
| Rob | 142-162 | 11.097 |
| AgaR | 256-279 | 10.187 |
| SoxS | 298-315 | 10.089 |
| LexA | 378-397 | 9.860 |
| RcsB | 297-310 | 9.751 |
| Lrp | 21-32 | 9.697 |
| ArgR | 380-395 | 9.650 |
| UlaR | 202-221 | 9.176 |
| LacI | 298-318 | 8.652 |
| XylR | 247-264 | 8.486 |
| CysB | 265-306 | 8.176 |
| NarL | 45-51 | 8.006 |
| GntR | 380-399 | 7.724 |
| GlpR | 24-43 | 7.617 |
| IHF | 269-281 | 7.613 |
| CRP | 167-188 | 7.385 |
| DeoR | 287-302 | 7.232 |
| OmpR | 262-281 | 7.229 |
| Fis | 159-179 | 7.226 |
| MalT | 317-326 | 6.992 |
| Nac | 301-315 | 6.740 |
| FNR | 19-40 | 6.729 |
| ModE | 200-226 | 6.635 |
| MelR | 356-373 | 6.598 |
| TorR | 258-267 | 6.460 |
| ArgP | 306-318 | 6.201 |
| MetR | 252-275 | 6.145 |
| Fur | 291-305 | 5.814 |
| CytR | 260-299 | 5.630 |
| PhoP | 298-314 | 5.612 |
| H-NS | 197-211 | 5.556 |
| NarP | 40-46 | 5.552 |
| MetJ | 218-225 | 5.548 |
| AraC | 269-286 | 5.269 |
| GcvA | 260-288 | 5.257 |
| IdnR | 204-219 | 5.116 |