| TF name | Position | PWM scan score |
| XylR | 81-98 | 13.046 |
| Fur | 41-55 | 12.446 |
| PspF | 142-158 | 11.694 |
| Rob | 148-168 | 11.386 |
| RcsB | 44-57 | 11.072 |
| NtrC | 27-43 | 10.279 |
| OmpR | 33-52 | 9.987 |
| FNR | 277-298 | 9.911 |
| DeoR | 104-119 | 9.499 |
| MetJ | 309-316 | 9.497 |
| PhoP | 368-384 | 9.396 |
| Mlc | 147-169 | 9.067 |
| Lrp | 6-17 | 8.798 |
| MetR | 48-71 | 8.307 |
| H-NS | 30-44 | 8.129 |
| CRP | 274-295 | 8.035 |
| IHF | 41-53 | 8.011 |
| GadE | 123-142 | 7.902 |
| IdnR | 33-48 | 7.797 |
| Nac | 120-134 | 7.511 |
| NarL | 366-372 | 7.310 |
| AraC | 372-389 | 7.139 |
| CpxR | 369-383 | 7.032 |
| UlaR | 294-313 | 6.905 |
| ArcA | 4-64 | 6.843 |
| MarA | 34-54 | 6.818 |
| NorR | 150-166 | 6.744 |
| Fis | 12-32 | 6.527 |
| AgaR | 376-399 | 6.308 |
| CytR | 54-93 | 6.138 |
| MalT | 145-154 | 6.042 |
| ModE | 313-339 | 5.973 |
| TorR | 367-376 | 5.853 |
| MelR | 108-125 | 5.614 |
| LexA | 150-169 | 5.429 |
| ArgP | 42-54 | 5.226 |
| PhoB | 123-142 | 5.108 |
| NarP | 389-395 | 5.084 |
| SoxS | 116-133 | 5.022 |