| TF name | Position | PWM scan score |
| GcvA | 73-101 | 10.434 |
| FruR | 61-78 | 9.038 |
| NorR | 71-87 | 8.684 |
| MetJ | 203-210 | 8.617 |
| H-NS | 68-82 | 8.336 |
| Rob | 63-83 | 8.096 |
| RcsB | 24-37 | 7.978 |
| SoxS | 315-332 | 7.739 |
| AgaR | 133-156 | 7.545 |
| PhoP | 25-41 | 7.517 |
| NarP | 354-360 | 6.654 |
| XylR | 143-160 | 6.488 |
| Fis | 28-48 | 6.265 |
| ArgR | 346-361 | 6.110 |
| NtrC | 215-231 | 5.853 |
| NarL | 71-77 | 5.823 |
| FadR | 317-333 | 5.574 |
| DnaA | 292-300 | 5.553 |
| OxyR | 51-95 | 5.404 |
| MarA | 23-43 | 5.351 |
| GadE | 68-87 | 5.276 |
| PhoB | 190-209 | 5.236 |
| CysB | 73-114 | 5.208 |
| Nac | 16-30 | 5.198 |
| TorR | 227-236 | 5.164 |