| TF name | Position | PWM scan score |
| LacI | 137-157 | 10.769 |
| H-NS | 361-375 | 10.577 |
| GcvA | 264-292 | 9.823 |
| Lrp | 174-185 | 9.797 |
| Fur | 267-281 | 9.024 |
| OmpR | 363-382 | 8.850 |
| IHF | 248-260 | 8.429 |
| SoxS | 230-247 | 8.066 |
| GadE | 167-186 | 7.937 |
| ArgP | 173-185 | 7.883 |
| NarP | 181-187 | 7.659 |
| PurR | 238-253 | 7.521 |
| Rob | 358-378 | 7.434 |
| PhoP | 123-139 | 7.247 |
| IdnR | 235-250 | 7.098 |
| TorR | 272-281 | 7.009 |
| RcsB | 270-283 | 6.964 |
| PspF | 352-368 | 6.504 |
| NarL | 198-204 | 6.169 |
| Nac | 346-360 | 6.116 |
| CRP | 136-157 | 5.974 |
| UxuR | 232-249 | 5.918 |
| PhoB | 368-387 | 5.765 |
| Fis | 371-391 | 5.748 |
| FruR | 240-257 | 5.436 |
| MalT | 85-94 | 5.100 |