| TF name | Position | PWM scan score |
| MetR | 373-396 | 11.849 |
| MetJ | 258-265 | 11.198 |
| IdnR | 356-371 | 10.080 |
| SoxS | 264-281 | 9.437 |
| AraC | 80-97 | 8.582 |
| ArgR | 137-152 | 8.181 |
| OmpR | 127-146 | 7.781 |
| GalS | 201-216 | 7.753 |
| GalR | 201-216 | 7.753 |
| Fis | 262-282 | 7.324 |
| IHF | 270-282 | 6.927 |
| Lrp | 276-287 | 6.815 |
| NarL | 275-281 | 6.678 |
| NarP | 109-115 | 6.598 |
| MarA | 270-290 | 6.554 |
| NorR | 339-355 | 6.287 |
| H-NS | 276-290 | 6.189 |
| MelR | 325-342 | 5.531 |
| ArgP | 281-293 | 5.494 |
| DnaA | 47-55 | 5.381 |