| TF name | Position | PWM scan score |
| RcsB | 342-355 | 12.209 |
| DnaA | 185-193 | 11.725 |
| Rob | 177-197 | 11.701 |
| Nac | 148-162 | 10.011 |
| MalT | 274-283 | 9.678 |
| Lrp | 342-353 | 9.352 |
| NarP | 217-223 | 8.982 |
| TorR | 10-19 | 7.948 |
| FruR | 122-139 | 7.792 |
| MetJ | 86-93 | 7.612 |
| PurR | 28-43 | 7.026 |
| IHF | 189-201 | 6.940 |
| RhaS | 198-214 | 6.851 |
| NarL | 170-176 | 6.252 |
| NtrC | 112-128 | 5.942 |
| Fis | 198-218 | 5.889 |
| UxuR | 263-280 | 5.827 |
| GlpR | 140-159 | 5.614 |
| ArgP | 52-64 | 5.603 |
| LexA | 305-324 | 5.552 |
| GalS | 299-314 | 5.441 |
| GalR | 299-314 | 5.441 |
| MarA | 232-252 | 5.346 |
| NorR | 5-21 | 5.233 |