| TF name | Position | PWM scan score |
| UlaR | 129-148 | 13.016 |
| GadE | 78-97 | 11.270 |
| PurR | 135-150 | 10.811 |
| OmpR | 137-156 | 10.791 |
| GcvA | 134-162 | 10.159 |
| ArcA | 136-196 | 10.131 |
| SoxS | 146-163 | 9.436 |
| RhaS | 115-131 | 9.175 |
| Lrp | 137-148 | 9.138 |
| Rob | 319-339 | 9.069 |
| Fis | 103-123 | 8.788 |
| Nac | 242-256 | 8.667 |
| RcsB | 138-151 | 8.543 |
| CysB | 153-194 | 8.326 |
| IHF | 261-273 | 8.185 |
| AraC | 134-151 | 8.069 |
| TorR | 243-252 | 7.994 |
| H-NS | 100-114 | 7.985 |
| GalR | 135-150 | 7.927 |
| GalS | 135-150 | 7.927 |
| AgaR | 341-364 | 7.708 |
| NarL | 186-192 | 7.577 |
| MarA | 116-136 | 7.505 |
| DeoR | 293-308 | 7.500 |
| MelR | 231-248 | 7.228 |
| MalT | 352-361 | 7.209 |
| PspF | 237-253 | 7.083 |
| PhoP | 119-135 | 7.031 |
| LexA | 375-394 | 6.992 |
| MetJ | 24-31 | 6.893 |
| PhoB | 177-196 | 6.833 |
| FNR | 160-181 | 6.763 |
| CRP | 232-253 | 6.658 |
| DnaA | 143-151 | 6.605 |
| NagC | 163-185 | 6.578 |
| XylR | 283-300 | 6.408 |
| ArgP | 224-236 | 5.978 |
| NtrC | 107-123 | 5.866 |
| CpxR | 317-331 | 5.633 |
| CytR | 148-187 | 5.579 |
| ArgR | 236-251 | 5.525 |
| NarP | 306-312 | 5.412 |
| FruR | 6-23 | 5.018 |