| TF name | Position | PWM scan score |
| ArcA | 68-128 | 18.609 |
| Fur | 256-270 | 12.348 |
| OmpR | 92-111 | 12.143 |
| TorR | 149-158 | 12.050 |
| GadE | 64-83 | 11.818 |
| Mlc | 292-314 | 11.171 |
| Nac | 60-74 | 11.090 |
| ModE | 95-121 | 10.565 |
| CytR | 71-110 | 10.161 |
| ArgR | 88-103 | 10.073 |
| MelR | 326-343 | 9.889 |
| ArgP | 307-319 | 9.734 |
| NagC | 297-319 | 9.504 |
| MetR | 281-304 | 9.357 |
| CysB | 228-269 | 9.074 |
| AraC | 68-85 | 9.067 |
| PurR | 351-366 | 8.947 |
| MetJ | 92-99 | 8.714 |
| UxuR | 95-112 | 8.392 |
| DnaA | 166-174 | 8.389 |
| NarP | 248-254 | 8.382 |
| H-NS | 90-104 | 8.378 |
| MarA | 187-207 | 8.262 |
| Lrp | 241-252 | 8.046 |
| SoxS | 104-121 | 7.838 |
| GlpR | 107-126 | 7.790 |
| AgaR | 77-100 | 7.706 |
| FNR | 96-117 | 7.201 |
| IHF | 233-245 | 6.928 |
| MalT | 171-180 | 6.747 |
| XylR | 287-304 | 6.689 |
| CRP | 255-276 | 6.462 |
| RcsB | 72-85 | 5.945 |
| NarL | 163-169 | 5.569 |
| Fis | 103-123 | 5.500 |
| GntR | 293-312 | 5.429 |
| TyrR | 86-107 | 5.395 |
| UlaR | 230-249 | 5.169 |
| PhoP | 140-156 | 5.073 |