| TF name | Position | PWM scan score |
| Fur | 40-54 | 12.348 |
| Mlc | 76-98 | 11.171 |
| Nac | 38-52 | 11.006 |
| H-NS | 178-192 | 10.508 |
| MelR | 110-127 | 9.889 |
| ArgP | 91-103 | 9.734 |
| GlpR | 299-318 | 9.707 |
| ArcA | 40-100 | 9.672 |
| NagC | 365-387 | 9.555 |
| PhoP | 379-395 | 9.481 |
| MetR | 65-88 | 9.357 |
| MetJ | 386-393 | 9.336 |
| OxyR | 348-392 | 9.180 |
| CysB | 12-53 | 9.074 |
| PurR | 135-150 | 8.947 |
| AraC | 70-87 | 8.517 |
| NarP | 32-38 | 8.382 |
| MalT | 357-366 | 8.246 |
| Lrp | 25-36 | 8.046 |
| MarA | 249-269 | 7.785 |
| TorR | 144-153 | 7.314 |
| NtrC | 303-319 | 7.182 |
| Rob | 187-207 | 7.110 |
| GadE | 278-297 | 7.012 |
| IHF | 17-29 | 6.928 |
| XylR | 71-88 | 6.689 |
| Ada | 362-389 | 6.560 |
| AgaR | 363-386 | 6.543 |
| CRP | 39-60 | 6.462 |
| FNR | 375-396 | 6.304 |
| DnaA | 30-38 | 6.246 |
| FruR | 350-367 | 6.188 |
| Fis | 375-395 | 6.048 |
| TyrR | 299-320 | 5.839 |
| OmpR | 328-347 | 5.829 |
| NarL | 211-217 | 5.595 |
| ModE | 46-72 | 5.543 |
| GntR | 77-96 | 5.429 |
| CueR | 207-225 | 5.362 |
| CpxR | 311-325 | 5.289 |
| UlaR | 14-33 | 5.169 |
| DeoR | 210-225 | 5.023 |