| TF name | Position | PWM scan score |
| GlpR | 170-189 | 9.609 |
| FruR | 151-168 | 9.350 |
| CRP | 192-213 | 8.985 |
| NarL | 262-268 | 8.619 |
| RcsB | 284-297 | 8.221 |
| PhoB | 70-89 | 7.944 |
| MalT | 246-255 | 7.760 |
| Rob | 357-377 | 7.333 |
| NorR | 229-245 | 7.220 |
| AgaR | 52-75 | 7.199 |
| CpxR | 64-78 | 7.143 |
| GalR | 151-166 | 6.886 |
| GalS | 151-166 | 6.886 |
| TorR | 238-247 | 6.798 |
| ArgR | 376-391 | 6.538 |
| RhaS | 228-244 | 6.398 |
| Lrp | 320-331 | 6.395 |
| FadR | 248-264 | 6.324 |
| IHF | 64-76 | 6.264 |
| MetR | 191-214 | 6.090 |
| Nac | 1-15 | 5.971 |
| FNR | 195-216 | 5.834 |
| MelR | 183-200 | 5.707 |
| CysB | 177-218 | 5.702 |
| MetJ | 297-304 | 5.700 |
| MarA | 128-148 | 5.327 |