| TF name | Position | PWM scan score |
| Fur | 284-298 | 13.984 |
| GadE | 339-358 | 13.888 |
| CysB | 311-352 | 13.270 |
| NorR | 283-299 | 12.841 |
| AraC | 5-22 | 12.187 |
| H-NS | 337-351 | 11.905 |
| FNR | 155-176 | 11.762 |
| ArcA | 291-351 | 11.694 |
| Rob | 281-301 | 11.511 |
| SoxS | 302-319 | 11.085 |
| UlaR | 44-63 | 10.868 |
| MelR | 363-380 | 10.014 |
| XylR | 256-273 | 9.921 |
| ArgP | 342-354 | 8.904 |
| Fis | 297-317 | 8.861 |
| PhoP | 159-175 | 8.651 |
| ArgR | 316-331 | 8.538 |
| FadR | 32-48 | 8.348 |
| RhaS | 356-372 | 8.153 |
| PhoB | 88-107 | 8.151 |
| LacI | 323-343 | 8.138 |
| Lrp | 371-382 | 7.965 |
| IHF | 347-359 | 7.895 |
| FruR | 142-159 | 7.547 |
| MalT | 275-284 | 7.502 |
| DnaA | 144-152 | 7.424 |
| MetR | 44-67 | 7.419 |
| CRP | 272-293 | 7.222 |
| UxuR | 143-160 | 7.015 |
| NarL | 292-298 | 6.854 |
| DeoR | 310-325 | 6.846 |
| MetJ | 127-134 | 6.692 |
| NtrC | 314-330 | 6.439 |
| GlpR | 154-173 | 6.377 |
| Nac | 315-329 | 6.356 |
| RcsB | 288-301 | 6.202 |
| Mlc | 319-341 | 6.185 |
| OmpR | 338-357 | 5.584 |
| NarP | 323-329 | 5.532 |
| TyrR | 321-342 | 5.043 |