| TF name | Position | PWM scan score |
| ArcA | 148-208 | 20.221 |
| Fur | 176-190 | 15.077 |
| FNR | 210-231 | 12.595 |
| CytR | 151-190 | 12.585 |
| Mlc | 83-105 | 12.068 |
| OmpR | 168-187 | 12.065 |
| TorR | 119-128 | 11.222 |
| Nac | 290-304 | 10.919 |
| IdnR | 204-219 | 10.613 |
| H-NS | 383-397 | 10.592 |
| NagC | 85-107 | 10.387 |
| AgaR | 129-152 | 10.267 |
| ArgR | 146-161 | 10.073 |
| XylR | 166-183 | 10.001 |
| FadR | 235-251 | 9.470 |
| GalR | 193-208 | 9.335 |
| GalS | 193-208 | 9.335 |
| AraC | 322-339 | 9.286 |
| IHF | 193-205 | 9.178 |
| Fis | 216-236 | 9.086 |
| PhoB | 182-201 | 8.931 |
| PurR | 193-208 | 8.718 |
| MetJ | 150-157 | 8.714 |
| CysB | 170-211 | 8.674 |
| MarA | 182-202 | 8.383 |
| SoxS | 184-201 | 8.374 |
| Rob | 357-377 | 7.977 |
| Lrp | 143-154 | 7.867 |
| ArgP | 189-201 | 7.519 |
| MetR | 195-218 | 7.390 |
| GcvA | 142-170 | 7.374 |
| NarL | 347-353 | 7.336 |
| CRP | 119-140 | 7.237 |
| DeoR | 346-361 | 7.114 |
| GadE | 188-207 | 6.325 |
| UlaR | 200-219 | 6.309 |
| TyrR | 235-256 | 6.031 |
| CpxR | 129-143 | 5.742 |
| NorR | 248-264 | 5.722 |
| Ada | 170-197 | 5.701 |
| ModE | 298-324 | 5.543 |
| DnaA | 122-130 | 5.321 |
| RhaS | 292-308 | 5.302 |