| TF name | Position | PWM scan score |
| ArcA | 323-383 | 13.378 |
| DnaA | 114-122 | 11.802 |
| ArgR | 277-292 | 10.237 |
| CysB | 323-364 | 9.669 |
| ArgP | 381-393 | 9.439 |
| MelR | 47-64 | 8.691 |
| PhoP | 275-291 | 8.657 |
| Lrp | 301-312 | 8.511 |
| PhoB | 357-376 | 8.506 |
| OmpR | 365-384 | 8.151 |
| RcsB | 299-312 | 7.926 |
| FNR | 330-351 | 7.761 |
| ModE | 350-376 | 7.665 |
| IHF | 357-369 | 7.617 |
| NarL | 8-14 | 7.577 |
| AgaR | 86-109 | 7.539 |
| GcvA | 356-384 | 7.418 |
| MarA | 374-394 | 7.392 |
| Fis | 294-314 | 7.211 |
| SoxS | 374-391 | 7.145 |
| GlpR | 104-123 | 6.944 |
| Mlc | 365-387 | 6.911 |
| NarP | 89-95 | 6.904 |
| Rob | 293-313 | 6.633 |
| H-NS | 363-377 | 6.553 |
| DeoR | 368-383 | 6.547 |
| UlaR | 353-372 | 6.528 |
| FadR | 345-361 | 6.351 |
| GntR | 173-192 | 6.176 |
| GadE | 268-287 | 5.859 |
| AraC | 44-61 | 5.826 |
| UxuR | 20-37 | 5.634 |
| Nac | 326-340 | 5.614 |
| NtrC | 64-80 | 5.511 |
| PspF | 182-198 | 5.440 |
| IdnR | 366-381 | 5.435 |
| Ada | 192-219 | 5.385 |
| MetJ | 63-70 | 5.185 |
| CRP | 327-348 | 5.170 |
| NagC | 34-56 | 5.004 |