| TF name | Position | PWM scan score |
| CysB | 284-325 | 15.256 |
| MalT | 17-26 | 12.292 |
| Ada | 153-180 | 11.301 |
| PspF | 104-120 | 10.628 |
| NagC | 116-138 | 10.563 |
| PurR | 293-308 | 10.255 |
| FNR | 170-191 | 10.195 |
| MarA | 374-394 | 9.933 |
| OmpR | 370-389 | 9.633 |
| DcuR | 160-214 | 9.189 |
| AgaR | 76-99 | 9.189 |
| UlaR | 80-99 | 8.765 |
| Nac | 87-101 | 8.625 |
| RcsB | 200-213 | 8.346 |
| GlpR | 85-104 | 8.244 |
| GadE | 200-219 | 8.235 |
| NorR | 112-128 | 8.026 |
| IHF | 176-188 | 7.980 |
| MetR | 159-182 | 7.976 |
| CRP | 219-240 | 7.802 |
| H-NS | 237-251 | 7.704 |
| ArgR | 148-163 | 7.606 |
| Lrp | 278-289 | 7.472 |
| ArcA | 92-152 | 7.190 |
| TorR | 37-46 | 7.186 |
| DnaA | 388-396 | 7.095 |
| ArgP | 237-249 | 7.059 |
| NarL | 385-391 | 6.881 |
| MetJ | 380-387 | 6.380 |
| Fis | 119-139 | 6.331 |
| DeoR | 221-236 | 6.306 |
| FhlA | 101-140 | 6.204 |
| TyrR | 167-188 | 6.196 |
| XylR | 135-152 | 5.877 |
| Mlc | 219-241 | 5.719 |
| UxuR | 139-156 | 5.678 |
| AraC | 146-163 | 5.514 |
| SoxS | 229-246 | 5.356 |
| ModE | 77-103 | 5.348 |
| CpxR | 56-70 | 5.330 |
| GalS | 64-79 | 5.261 |
| GalR | 64-79 | 5.261 |
| NarP | 167-173 | 5.224 |