| TF name | Position | PWM scan score |
| Fis | 359-379 | 11.764 |
| RhaS | 57-73 | 11.582 |
| IHF | 176-188 | 9.942 |
| H-NS | 366-380 | 9.330 |
| NarP | 108-114 | 8.877 |
| GalS | 301-316 | 8.115 |
| GalR | 301-316 | 8.115 |
| MalT | 219-228 | 7.923 |
| CueR | 73-91 | 7.467 |
| ArgR | 86-101 | 7.265 |
| NarL | 121-127 | 7.041 |
| PurR | 19-34 | 6.884 |
| SoxS | 353-370 | 6.856 |
| DnaA | 157-165 | 6.741 |
| MarA | 351-371 | 6.499 |
| Rob | 370-390 | 6.201 |
| FNR | 41-62 | 6.003 |
| GntR | 179-198 | 5.975 |
| ModE | 358-384 | 5.918 |
| AraC | 377-394 | 5.746 |
| MetJ | 143-150 | 5.618 |
| GlpR | 235-254 | 5.348 |
| FadR | 182-198 | 5.325 |