| TF name | Position | PWM scan score |
| RhaS | 193-209 | 16.638 |
| UlaR | 207-226 | 10.110 |
| IHF | 348-360 | 9.330 |
| RcsB | 238-251 | 9.303 |
| TrpR | 236-253 | 9.189 |
| NorR | 242-258 | 9.015 |
| Fur | 78-92 | 8.978 |
| Nac | 53-67 | 8.941 |
| GadE | 380-399 | 8.668 |
| LexA | 98-117 | 8.319 |
| NarL | 340-346 | 8.169 |
| DeoR | 100-115 | 8.036 |
| ArgP | 380-392 | 7.961 |
| GcvA | 80-108 | 7.925 |
| Lrp | 378-389 | 7.652 |
| MalT | 130-139 | 7.588 |
| GalS | 14-29 | 7.287 |
| GalR | 14-29 | 7.287 |
| PurR | 80-95 | 7.283 |
| NtrC | 31-47 | 7.178 |
| TorR | 60-69 | 6.531 |
| CRP | 243-264 | 6.298 |
| FNR | 339-360 | 6.265 |
| GntR | 139-158 | 6.228 |
| FadR | 271-287 | 5.931 |
| OmpR | 236-255 | 5.860 |
| NarP | 4-10 | 5.801 |
| SoxS | 201-218 | 5.713 |
| CueR | 359-377 | 5.515 |
| AraC | 232-249 | 5.420 |
| MarA | 97-117 | 5.396 |
| ArgR | 100-115 | 5.288 |
| Fis | 205-225 | 5.158 |