| TF name | Position | PWM scan score |
| MetJ | 287-294 | 10.100 |
| DeoR | 374-389 | 8.692 |
| TyrR | 179-200 | 8.678 |
| DnaA | 272-280 | 8.272 |
| MalT | 115-124 | 8.136 |
| ArgP | 269-281 | 8.054 |
| MarA | 325-345 | 7.712 |
| TorR | 284-293 | 7.610 |
| H-NS | 379-393 | 7.443 |
| GlpR | 240-259 | 7.220 |
| NarL | 272-278 | 6.854 |
| CpxR | 276-290 | 6.691 |
| LacI | 268-288 | 6.633 |
| Lrp | 388-399 | 6.525 |
| NtrC | 137-153 | 6.495 |
| FhlA | 204-243 | 6.244 |
| XylR | 263-280 | 6.176 |
| OmpR | 379-398 | 6.168 |
| Rob | 265-285 | 6.103 |
| IHF | 195-207 | 5.160 |