| TF name | Position | PWM scan score |
| NorR | 55-71 | 19.995 |
| AraC | 213-230 | 15.750 |
| ArcA | 190-250 | 14.101 |
| ModE | 45-71 | 12.588 |
| GntR | 348-367 | 11.924 |
| CysB | 203-244 | 11.654 |
| OmpR | 368-387 | 11.279 |
| TyrR | 120-141 | 10.683 |
| ArgR | 209-224 | 10.472 |
| UlaR | 70-89 | 9.731 |
| H-NS | 366-380 | 9.720 |
| LexA | 122-141 | 9.594 |
| IHF | 213-225 | 9.399 |
| Fis | 279-299 | 8.883 |
| ArgP | 216-228 | 8.882 |
| Rob | 360-380 | 8.865 |
| GadE | 370-389 | 8.800 |
| Lrp | 39-50 | 8.737 |
| NagC | 60-82 | 8.540 |
| Fur | 376-390 | 8.211 |
| MarA | 367-387 | 8.209 |
| IdnR | 290-305 | 8.029 |
| Nac | 205-219 | 7.839 |
| AgaR | 72-95 | 7.316 |
| NarP | 297-303 | 7.162 |
| NarL | 358-364 | 7.107 |
| DnaA | 339-347 | 7.037 |
| MalT | 106-115 | 6.839 |
| XylR | 211-228 | 6.811 |
| SoxS | 321-338 | 6.780 |
| GalR | 383-398 | 6.664 |
| GalS | 383-398 | 6.664 |
| MelR | 278-295 | 6.569 |
| UxuR | 301-318 | 6.526 |
| CytR | 19-58 | 6.520 |
| CpxR | 213-227 | 6.502 |
| OxyR | 39-83 | 6.169 |
| PhoP | 365-381 | 5.954 |
| TorR | 212-221 | 5.632 |
| PurR | 160-175 | 5.590 |
| CRP | 350-371 | 5.576 |
| Ada | 30-57 | 5.448 |
| FNR | 280-301 | 5.021 |