| TF name | Position | PWM scan score |
| GcvA | 42-70 | 9.937 |
| PspF | 45-61 | 9.548 |
| DeoR | 290-305 | 9.401 |
| MalT | 134-143 | 9.267 |
| PhoB | 357-376 | 9.172 |
| FruR | 353-370 | 9.105 |
| IHF | 73-85 | 8.984 |
| ArgP | 368-380 | 8.422 |
| NtrC | 367-383 | 7.749 |
| MarA | 332-352 | 7.700 |
| RhaS | 50-66 | 7.297 |
| Lrp | 239-250 | 7.247 |
| RcsB | 210-223 | 7.090 |
| TorR | 44-53 | 6.782 |
| NarL | 194-200 | 6.697 |
| DnaA | 273-281 | 6.355 |
| H-NS | 255-269 | 6.331 |
| FNR | 357-378 | 6.157 |
| GadE | 357-376 | 5.928 |
| MelR | 70-87 | 5.851 |
| GalS | 187-202 | 5.727 |
| GalR | 187-202 | 5.727 |
| Nac | 145-159 | 5.561 |
| NarP | 162-168 | 5.498 |
| SoxS | 186-203 | 5.442 |
| Fis | 338-358 | 5.348 |
| MetJ | 320-327 | 5.309 |