| TF name | Position | PWM scan score |
| TorR | 96-105 | 10.806 |
| XylR | 111-128 | 9.329 |
| H-NS | 112-126 | 9.203 |
| IHF | 312-324 | 8.522 |
| DnaA | 322-330 | 8.238 |
| GadE | 315-334 | 8.016 |
| ArgR | 308-323 | 7.881 |
| PhoP | 99-115 | 7.696 |
| Rob | 112-132 | 7.578 |
| ArgP | 113-125 | 7.441 |
| GlpR | 312-331 | 7.438 |
| NarP | 353-359 | 7.426 |
| GalS | 132-147 | 7.185 |
| GalR | 132-147 | 7.185 |
| MetR | 95-118 | 6.863 |
| IdnR | 259-274 | 6.688 |
| MalT | 235-244 | 6.572 |
| SoxS | 378-395 | 6.348 |
| UlaR | 178-197 | 6.059 |
| NtrC | 174-190 | 6.012 |
| Fis | 143-163 | 5.978 |
| NarL | 389-395 | 5.902 |
| Lrp | 109-120 | 5.750 |
| GcvA | 99-127 | 5.241 |
| CRP | 53-74 | 5.051 |