| TF name | Position | PWM scan score |
| CueR | 289-307 | 14.428 |
| NtrC | 155-171 | 11.429 |
| RhaS | 18-34 | 10.980 |
| TyrR | 189-210 | 10.420 |
| SoxS | 315-332 | 9.733 |
| PurR | 116-131 | 9.681 |
| Fis | 162-182 | 9.626 |
| MarA | 313-333 | 9.283 |
| TorR | 13-22 | 9.206 |
| FhlA | 154-193 | 8.866 |
| AraC | 174-191 | 8.847 |
| MalT | 180-189 | 8.780 |
| ModE | 182-208 | 8.428 |
| NarP | 338-344 | 7.885 |
| FruR | 204-221 | 7.797 |
| GntR | 312-331 | 7.768 |
| NarL | 74-80 | 7.740 |
| GlpR | 337-356 | 7.480 |
| ArgP | 377-389 | 7.055 |
| IHF | 203-215 | 6.978 |
| IdnR | 297-312 | 6.820 |
| H-NS | 328-342 | 6.457 |
| FNR | 308-329 | 6.217 |
| Lrp | 189-200 | 5.966 |
| UlaR | 198-217 | 5.819 |
| NorR | 206-222 | 5.403 |
| MelR | 286-303 | 5.290 |
| XylR | 104-121 | 5.172 |
| DeoR | 377-392 | 5.158 |
| DnaA | 100-108 | 5.062 |