| TF name | Position | PWM scan score |
| LacI | 219-239 | 9.594 |
| GntR | 65-84 | 9.073 |
| AraC | 114-131 | 8.676 |
| TorR | 113-122 | 8.551 |
| SoxS | 77-94 | 8.245 |
| MarA | 75-95 | 8.233 |
| NorR | 115-131 | 8.163 |
| H-NS | 80-94 | 8.002 |
| IHF | 252-264 | 7.833 |
| AgaR | 231-254 | 7.622 |
| NarL | 115-121 | 7.080 |
| PhoB | 144-163 | 7.066 |
| OmpR | 135-154 | 6.814 |
| Rob | 33-53 | 6.744 |
| NagC | 129-151 | 6.370 |
| OxyR | 87-131 | 6.287 |
| MalT | 69-78 | 6.246 |
| MetJ | 10-17 | 6.240 |
| UlaR | 117-136 | 6.146 |
| Lrp | 44-55 | 5.947 |
| LexA | 112-131 | 5.747 |
| NarP | 303-309 | 5.698 |
| ArcA | 87-147 | 5.341 |
| MetR | 112-135 | 5.295 |
| Mlc | 127-149 | 5.078 |
| GadE | 112-131 | 5.044 |
| FNR | 234-255 | 5.030 |
| RhaS | 74-90 | 5.013 |