| TF name | Position | PWM scan score |
| GadE | 252-271 | 11.316 |
| FadR | 365-381 | 10.516 |
| GlpR | 345-364 | 10.442 |
| Rob | 231-251 | 9.452 |
| ArgP | 256-268 | 9.346 |
| MarA | 270-290 | 8.865 |
| ArcA | 286-346 | 8.841 |
| MetR | 296-319 | 8.731 |
| NarP | 159-165 | 8.308 |
| AraC | 118-135 | 7.863 |
| UlaR | 320-339 | 7.789 |
| NtrC | 349-365 | 7.726 |
| AgaR | 243-266 | 7.670 |
| GntR | 322-341 | 7.618 |
| IHF | 319-331 | 7.338 |
| NarL | 292-298 | 7.336 |
| MalT | 244-253 | 7.200 |
| ArgR | 257-272 | 6.707 |
| H-NS | 377-391 | 6.648 |
| Lrp | 304-315 | 6.590 |
| TorR | 207-216 | 6.460 |
| DnaA | 128-136 | 6.433 |
| ModE | 371-397 | 6.114 |
| RcsB | 378-391 | 5.731 |
| CRP | 322-343 | 5.685 |
| GalR | 118-133 | 5.588 |
| GalS | 118-133 | 5.588 |
| MetJ | 320-327 | 5.567 |
| OmpR | 328-347 | 5.387 |
| PhoP | 259-275 | 5.317 |
| PspF | 140-156 | 5.308 |
| MelR | 343-360 | 5.027 |