| TF name | Position | PWM scan score |
| CRP | 96-117 | 13.014 |
| ArgP | 272-284 | 11.708 |
| PhoB | 263-282 | 11.101 |
| NtrC | 46-62 | 11.060 |
| FNR | 357-378 | 10.589 |
| RcsB | 378-391 | 9.568 |
| AgaR | 292-315 | 9.140 |
| NarP | 25-31 | 8.982 |
| Fis | 231-251 | 8.697 |
| IHF | 378-390 | 8.328 |
| Nac | 370-384 | 8.249 |
| Lrp | 350-361 | 8.044 |
| LexA | 211-230 | 7.688 |
| Fur | 372-386 | 7.639 |
| AraC | 372-389 | 7.625 |
| OmpR | 353-372 | 7.554 |
| FadR | 92-108 | 7.486 |
| ArcA | 267-327 | 7.196 |
| H-NS | 271-285 | 7.194 |
| SoxS | 365-382 | 7.123 |
| CytR | 72-111 | 7.072 |
| ArgR | 374-389 | 6.702 |
| MetJ | 363-370 | 6.692 |
| GadE | 353-372 | 6.689 |
| NarL | 61-67 | 6.494 |
| MalT | 148-157 | 6.440 |
| XylR | 286-303 | 6.274 |
| Rob | 369-389 | 6.161 |
| GalS | 367-382 | 5.655 |
| GalR | 367-382 | 5.655 |
| PspF | 262-278 | 5.652 |
| PhoP | 92-108 | 5.470 |
| GntR | 142-161 | 5.319 |
| MetR | 340-363 | 5.102 |
| CueR | 313-331 | 5.026 |