| TF name | Position | PWM scan score |
| ArcA | 337-397 | 28.369 |
| Mlc | 162-184 | 19.567 |
| MetR | 324-347 | 15.499 |
| CysB | 146-187 | 13.561 |
| ArgR | 371-386 | 12.000 |
| NorR | 139-155 | 11.331 |
| FruR | 304-321 | 10.780 |
| IHF | 375-387 | 10.611 |
| NagC | 164-186 | 10.353 |
| UlaR | 141-160 | 9.969 |
| UxuR | 272-289 | 9.910 |
| GcvA | 62-90 | 9.872 |
| ArgP | 270-282 | 9.738 |
| Nac | 142-156 | 9.571 |
| GalR | 221-236 | 9.342 |
| GalS | 221-236 | 9.342 |
| PspF | 283-299 | 9.312 |
| Rob | 306-326 | 9.117 |
| MarA | 154-174 | 9.078 |
| Fur | 220-234 | 8.871 |
| TyrR | 347-368 | 8.855 |
| DnaA | 274-282 | 8.795 |
| RcsB | 138-151 | 8.743 |
| OxyR | 285-329 | 8.654 |
| H-NS | 377-391 | 8.595 |
| OmpR | 337-356 | 8.445 |
| ModE | 364-390 | 8.277 |
| MelR | 331-348 | 8.261 |
| AgaR | 351-374 | 8.144 |
| IdnR | 364-379 | 8.120 |
| FNR | 156-177 | 8.057 |
| PhoB | 175-194 | 7.963 |
| MetJ | 4-11 | 7.936 |
| Lrp | 159-170 | 7.741 |
| Fis | 312-332 | 7.644 |
| TorR | 126-135 | 7.620 |
| LexA | 139-158 | 7.520 |
| CytR | 341-380 | 7.206 |
| CRP | 1-22 | 7.167 |
| RhaS | 19-35 | 6.786 |
| GadE | 271-290 | 6.662 |
| DcuR | 249-303 | 6.652 |
| XylR | 292-309 | 6.650 |
| NarP | 290-296 | 6.629 |
| PhoP | 373-389 | 6.443 |
| LacI | 362-382 | 6.191 |
| AraC | 194-211 | 6.081 |
| NarL | 298-304 | 5.864 |
| FadR | 332-348 | 5.822 |
| SoxS | 277-294 | 5.607 |
| CpxR | 359-373 | 5.456 |
| Ada | 52-79 | 5.298 |
| DeoR | 384-399 | 5.082 |