| TF name | Position | PWM scan score |
| ArcA | 311-371 | 16.754 |
| ModE | 53-79 | 15.970 |
| Rob | 302-322 | 15.164 |
| OmpR | 334-353 | 12.630 |
| NtrC | 274-290 | 12.282 |
| GalS | 60-75 | 12.234 |
| GalR | 60-75 | 12.234 |
| CysB | 311-352 | 10.139 |
| AraC | 218-235 | 10.012 |
| Fis | 337-357 | 9.813 |
| IHF | 344-356 | 9.450 |
| NagC | 334-356 | 9.399 |
| Mlc | 328-350 | 9.029 |
| ArgP | 343-355 | 8.906 |
| CRP | 329-350 | 8.598 |
| XylR | 232-249 | 8.139 |
| H-NS | 332-346 | 7.646 |
| PhoB | 317-336 | 7.427 |
| SoxS | 370-387 | 7.262 |
| MetJ | 266-273 | 7.261 |
| Ada | 11-38 | 7.226 |
| CytR | 330-369 | 7.218 |
| ArgR | 340-355 | 7.021 |
| GcvA | 301-329 | 6.852 |
| GadE | 335-354 | 6.757 |
| TorR | 249-258 | 6.743 |
| Nac | 333-347 | 6.578 |
| NarL | 179-185 | 6.305 |
| IdnR | 269-284 | 6.014 |
| GlpR | 353-372 | 5.952 |
| PhoP | 370-386 | 5.871 |
| MarA | 368-388 | 5.859 |
| FadR | 254-270 | 5.846 |
| NarP | 218-224 | 5.698 |
| RhaS | 42-58 | 5.689 |
| Lrp | 361-372 | 5.566 |
| UlaR | 380-399 | 5.517 |
| MetR | 95-118 | 5.044 |