| TF name | Position | PWM scan score |
| GalR | 162-177 | 10.611 |
| GalS | 162-177 | 10.611 |
| NorR | 362-378 | 10.036 |
| NagC | 118-140 | 9.727 |
| MelR | 187-204 | 9.349 |
| H-NS | 80-94 | 9.120 |
| Fis | 373-393 | 8.652 |
| MarA | 201-221 | 8.406 |
| SoxS | 195-212 | 8.322 |
| FNR | 167-188 | 8.236 |
| ModE | 322-348 | 7.968 |
| ArgP | 44-56 | 7.865 |
| NarL | 44-50 | 7.740 |
| PurR | 162-177 | 7.470 |
| CRP | 181-202 | 7.393 |
| NtrC | 316-332 | 7.346 |
| Lrp | 328-339 | 7.149 |
| DnaA | 156-164 | 6.913 |
| XylR | 196-213 | 6.551 |
| GntR | 164-183 | 6.545 |
| RhaS | 170-186 | 6.335 |
| DeoR | 183-198 | 6.140 |
| OmpR | 80-99 | 6.124 |
| TorR | 375-384 | 6.049 |
| GlpR | 252-271 | 5.741 |
| IHF | 368-380 | 5.729 |
| NarP | 2-8 | 5.507 |
| Nac | 120-134 | 5.436 |
| LexA | 227-246 | 5.368 |
| AraC | 338-355 | 5.203 |
| PhoB | 78-97 | 5.048 |