| TF name | Position | PWM scan score |
| AgaR | 205-228 | 14.500 |
| GntR | 17-36 | 13.283 |
| Ada | 200-227 | 11.044 |
| GcvA | 169-197 | 10.851 |
| AraC | 26-43 | 10.671 |
| H-NS | 345-359 | 10.175 |
| NarP | 26-32 | 8.982 |
| GlpR | 294-313 | 8.966 |
| TorR | 57-66 | 8.955 |
| NtrC | 245-261 | 8.761 |
| MalT | 68-77 | 8.567 |
| CpxR | 342-356 | 8.486 |
| OmpR | 344-363 | 8.415 |
| NorR | 63-79 | 7.993 |
| FNR | 140-161 | 7.717 |
| ArgP | 346-358 | 7.519 |
| RhaS | 219-235 | 7.412 |
| PurR | 264-279 | 7.309 |
| CRP | 137-158 | 7.273 |
| TyrR | 58-79 | 7.247 |
| LacI | 235-255 | 7.228 |
| PhoB | 324-343 | 7.220 |
| Lrp | 143-154 | 6.857 |
| Rob | 233-253 | 6.660 |
| IHF | 164-176 | 6.585 |
| ModE | 252-278 | 6.428 |
| PhoP | 341-357 | 6.348 |
| NarL | 160-166 | 6.331 |
| MetJ | 352-359 | 6.303 |
| FadR | 292-308 | 6.147 |
| DnaA | 24-32 | 6.096 |
| Nac | 284-298 | 6.065 |
| ArgR | 257-272 | 6.055 |
| UxuR | 337-354 | 6.044 |
| ArcA | 7-67 | 5.882 |
| MelR | 338-355 | 5.661 |
| Fis | 278-298 | 5.533 |
| SoxS | 20-37 | 5.150 |