| TF name | Position | PWM scan score |
| AgaR | 49-72 | 13.196 |
| AraC | 40-57 | 12.480 |
| IHF | 119-131 | 11.620 |
| TorR | 269-278 | 11.356 |
| MarA | 231-251 | 9.215 |
| FNR | 110-131 | 9.122 |
| GadE | 373-392 | 8.477 |
| NarL | 285-291 | 8.142 |
| NorR | 50-66 | 8.084 |
| NarP | 320-326 | 7.885 |
| H-NS | 369-383 | 7.864 |
| ArgR | 372-387 | 7.601 |
| GalS | 100-115 | 7.600 |
| GalR | 100-115 | 7.600 |
| MetJ | 36-43 | 7.190 |
| RcsB | 267-280 | 7.138 |
| GcvA | 149-177 | 6.765 |
| Lrp | 373-384 | 6.725 |
| DnaA | 118-126 | 6.434 |
| MalT | 195-204 | 6.382 |
| MetR | 90-113 | 5.918 |
| SoxS | 233-250 | 5.857 |
| Nac | 139-153 | 5.796 |
| PhoB | 273-292 | 5.769 |
| FadR | 321-337 | 5.479 |
| IdnR | 205-220 | 5.257 |
| Fis | 263-283 | 5.209 |
| GntR | 147-166 | 5.158 |
| GlpR | 166-185 | 5.099 |