| TF name | Position | PWM scan score |
| NagC | 368-390 | 13.889 |
| Ada | 38-65 | 12.483 |
| FNR | 368-389 | 12.172 |
| H-NS | 381-395 | 11.412 |
| Lrp | 130-141 | 10.685 |
| IHF | 377-389 | 10.272 |
| DeoR | 199-214 | 10.037 |
| PhoB | 251-270 | 9.837 |
| NorR | 55-71 | 9.457 |
| GntR | 342-361 | 8.499 |
| MarA | 121-141 | 8.387 |
| OxyR | 86-130 | 8.305 |
| SoxS | 106-123 | 8.282 |
| AraC | 170-187 | 8.076 |
| TorR | 341-350 | 7.909 |
| DnaA | 135-143 | 7.469 |
| NtrC | 35-51 | 7.445 |
| OmpR | 299-318 | 7.157 |
| Nac | 30-44 | 6.772 |
| CueR | 347-365 | 6.706 |
| ArgP | 86-98 | 6.433 |
| ArgR | 295-310 | 6.429 |
| NarP | 53-59 | 6.334 |
| CpxR | 117-131 | 6.315 |
| XylR | 375-392 | 6.254 |
| MetJ | 19-26 | 6.091 |
| UlaR | 118-137 | 5.604 |
| FhlA | 63-102 | 5.547 |
| UxuR | 357-374 | 5.464 |
| CytR | 54-93 | 5.442 |
| MalT | 247-256 | 5.406 |
| AgaR | 157-180 | 5.295 |
| Rob | 75-95 | 5.254 |
| RcsB | 128-141 | 5.224 |