| TF name | Position | PWM scan score |
| Ada | 211-238 | 8.690 |
| H-NS | 285-299 | 8.604 |
| RcsB | 46-59 | 8.515 |
| SoxS | 381-398 | 8.480 |
| IdnR | 380-395 | 8.120 |
| NarL | 382-388 | 8.006 |
| PurR | 332-347 | 7.949 |
| ModE | 306-332 | 7.864 |
| NtrC | 165-181 | 7.833 |
| DeoR | 355-370 | 7.685 |
| GlpR | 314-333 | 7.416 |
| PhoB | 339-358 | 7.161 |
| PhoP | 293-309 | 7.110 |
| Rob | 281-301 | 6.991 |
| MetJ | 99-106 | 6.954 |
| TyrR | 351-372 | 6.891 |
| Nac | 274-288 | 6.830 |
| MarA | 379-399 | 6.826 |
| GntR | 372-391 | 6.574 |
| DnaA | 323-331 | 6.527 |
| Fis | 189-209 | 6.391 |
| XylR | 225-242 | 6.352 |
| Lrp | 30-41 | 6.006 |
| OxyR | 280-324 | 5.809 |
| CRP | 152-173 | 5.786 |
| LacI | 374-394 | 5.710 |
| ArgP | 320-332 | 5.659 |
| IHF | 134-146 | 5.653 |
| FadR | 92-108 | 5.636 |
| LexA | 55-74 | 5.511 |
| ArgR | 279-294 | 5.500 |
| NarP | 387-393 | 5.482 |
| AraC | 45-62 | 5.471 |
| FNR | 361-382 | 5.158 |
| OmpR | 168-187 | 5.107 |
| GadE | 127-146 | 5.085 |
| GalR | 356-371 | 5.034 |
| GalS | 356-371 | 5.034 |