| TF name | Position | PWM scan score |
| OmpR | 367-386 | 12.592 |
| GcvA | 367-395 | 12.383 |
| GadE | 374-393 | 12.146 |
| UlaR | 167-186 | 11.852 |
| FNR | 291-312 | 11.078 |
| MetR | 156-179 | 10.131 |
| CRP | 288-309 | 10.029 |
| Nac | 199-213 | 9.804 |
| Fis | 203-223 | 9.674 |
| ArgR | 283-298 | 9.665 |
| ModE | 276-302 | 9.617 |
| PhoP | 381-397 | 9.412 |
| DnaA | 128-136 | 9.103 |
| MelR | 382-399 | 9.098 |
| AraC | 195-212 | 8.980 |
| TorR | 344-353 | 8.649 |
| MetJ | 177-184 | 8.626 |
| TyrR | 283-304 | 8.589 |
| FadR | 70-86 | 8.261 |
| H-NS | 370-384 | 8.043 |
| MarA | 297-317 | 7.909 |
| DeoR | 283-298 | 7.528 |
| Fur | 282-296 | 7.430 |
| PhoB | 278-297 | 7.186 |
| NarL | 290-296 | 7.147 |
| CysB | 273-314 | 6.819 |
| IHF | 203-215 | 6.688 |
| GalS | 147-162 | 6.688 |
| GalR | 147-162 | 6.688 |
| Lrp | 206-217 | 6.660 |
| NtrC | 76-92 | 6.640 |
| ArgP | 68-80 | 6.576 |
| XylR | 284-301 | 6.575 |
| NagC | 354-376 | 6.547 |
| CytR | 176-215 | 6.423 |
| PspF | 366-382 | 6.417 |
| ArcA | 338-398 | 6.014 |
| RcsB | 64-77 | 5.985 |
| SoxS | 299-316 | 5.874 |
| NorR | 89-105 | 5.722 |
| NarP | 253-259 | 5.552 |
| GlpR | 11-30 | 5.544 |
| IdnR | 91-106 | 5.245 |