| TF name | Position | PWM scan score |
| MetR | 321-344 | 17.320 |
| RcsB | 330-343 | 12.383 |
| SoxS | 151-168 | 10.415 |
| GalS | 152-167 | 10.097 |
| GalR | 152-167 | 10.097 |
| Rob | 187-207 | 9.206 |
| Mlc | 316-338 | 9.121 |
| OmpR | 31-50 | 8.658 |
| FadR | 177-193 | 8.486 |
| H-NS | 72-86 | 8.339 |
| FNR | 317-338 | 7.598 |
| AraC | 121-138 | 7.416 |
| TyrR | 29-50 | 7.316 |
| DnaA | 305-313 | 7.297 |
| MetJ | 259-266 | 7.240 |
| PhoP | 68-84 | 7.081 |
| Nac | 74-88 | 6.907 |
| GadE | 37-56 | 6.780 |
| Lrp | 329-340 | 6.777 |
| ArgR | 328-343 | 6.590 |
| MarA | 180-200 | 6.589 |
| GcvA | 29-57 | 6.464 |
| PspF | 189-205 | 6.421 |
| GntR | 345-364 | 6.371 |
| Fis | 193-213 | 6.336 |
| DeoR | 305-320 | 6.313 |
| MalT | 9-18 | 6.216 |
| CRP | 317-338 | 6.121 |
| IHF | 316-328 | 6.097 |
| ModE | 63-89 | 6.000 |
| ArgP | 34-46 | 5.743 |
| MelR | 117-134 | 5.546 |
| FruR | 296-313 | 5.339 |
| XylR | 185-202 | 5.315 |
| UlaR | 22-41 | 5.143 |
| PhoB | 158-177 | 5.130 |