| TF name | Position | PWM scan score |
| DcuR | 214-268 | 16.426 |
| UlaR | 215-234 | 13.558 |
| CysB | 185-226 | 12.448 |
| GlpR | 369-388 | 11.959 |
| FNR | 370-391 | 11.803 |
| MetR | 245-268 | 11.696 |
| H-NS | 383-397 | 11.109 |
| ArcA | 220-280 | 10.827 |
| PhoP | 374-390 | 10.277 |
| PhoB | 368-387 | 9.905 |
| ArgP | 379-391 | 9.825 |
| CRP | 369-390 | 9.702 |
| CytR | 222-261 | 9.684 |
| FhlA | 100-139 | 9.601 |
| NagC | 258-280 | 9.554 |
| OmpR | 366-385 | 9.533 |
| CpxR | 33-47 | 9.080 |
| DnaA | 171-179 | 8.763 |
| ArgR | 363-378 | 8.567 |
| TorR | 258-267 | 8.544 |
| SoxS | 9-26 | 8.335 |
| RcsB | 219-232 | 8.239 |
| Lrp | 310-321 | 8.134 |
| IHF | 216-228 | 8.033 |
| Fis | 366-386 | 7.818 |
| MalT | 1-10 | 7.814 |
| AgaR | 264-287 | 7.681 |
| MarA | 354-374 | 7.507 |
| NorR | 231-247 | 7.493 |
| GadE | 186-205 | 7.235 |
| AraC | 17-34 | 7.122 |
| RhaS | 328-344 | 6.942 |
| NarL | 254-260 | 6.718 |
| Nac | 147-161 | 6.682 |
| Rob | 368-388 | 6.177 |
| CueR | 6-24 | 5.945 |
| TrpR | 42-59 | 5.927 |
| MetJ | 357-364 | 5.904 |
| Mlc | 234-256 | 5.882 |
| PspF | 280-296 | 5.718 |
| XylR | 317-334 | 5.654 |
| UxuR | 191-208 | 5.493 |
| Fur | 22-36 | 5.481 |