| TF name | Position | PWM scan score |
| SoxS | 131-148 | 9.854 |
| Rob | 135-155 | 9.330 |
| CpxR | 353-367 | 9.080 |
| Lrp | 214-225 | 8.144 |
| MalT | 321-330 | 7.814 |
| GadE | 242-261 | 7.213 |
| Fis | 137-157 | 7.197 |
| AraC | 337-354 | 7.122 |
| OmpR | 333-352 | 6.988 |
| ArgR | 340-355 | 6.938 |
| DnaA | 36-44 | 6.709 |
| LexA | 188-207 | 6.684 |
| UxuR | 137-154 | 6.407 |
| IHF | 249-261 | 6.295 |
| Mlc | 218-240 | 6.272 |
| CueR | 247-265 | 6.181 |
| RhaS | 88-104 | 6.012 |
| NarL | 251-257 | 5.999 |
| GlpR | 26-45 | 5.937 |
| TrpR | 362-379 | 5.927 |
| NarP | 163-169 | 5.801 |
| H-NS | 219-233 | 5.739 |
| NagC | 202-224 | 5.721 |
| MetJ | 151-158 | 5.618 |
| Fur | 342-356 | 5.481 |
| PspF | 332-348 | 5.474 |
| PhoB | 333-352 | 5.437 |
| FruR | 230-247 | 5.294 |