| TF name | Position | PWM scan score |
| AraC | 288-305 | 10.854 |
| Nac | 13-27 | 10.382 |
| ArgP | 172-184 | 10.249 |
| NarP | 281-287 | 8.841 |
| MetJ | 174-181 | 8.082 |
| MalT | 372-381 | 8.067 |
| TorR | 118-127 | 7.835 |
| ArgR | 166-181 | 7.753 |
| Fis | 206-226 | 7.675 |
| NtrC | 57-73 | 7.655 |
| AgaR | 121-144 | 7.306 |
| RcsB | 30-43 | 6.898 |
| NarL | 169-175 | 6.854 |
| FadR | 220-236 | 6.565 |
| Rob | 279-299 | 5.864 |
| DnaA | 172-180 | 5.744 |
| XylR | 277-294 | 5.654 |
| Lrp | 211-222 | 5.601 |
| DeoR | 47-62 | 5.373 |
| FNR | 174-195 | 5.354 |
| IHF | 5-17 | 5.208 |
| MarA | 48-68 | 5.174 |
| UlaR | 228-247 | 5.138 |
| MetR | 124-147 | 5.135 |